species:   Scscl
pid:       PID1752
parent:    Ssc-milR-228
paralog:   
locus:     NW_001820832.1:432472-432537
matures:   ['UGGAGAUGAUGGAACCUCGA', 'GAUCCAUCGCCCAUA']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820832.1:432472-432537

2 out of bounds
5 alignments
4 proper strand
3 stranded perfect matches

**********************                          ******************
UUGGAGAUGAUGGAACCUCGACUUGAGCAAGGAGAGACCUGUUUGCAAGUAGAUCCAUCGCCCAUA
.(((.(.(((((((...((.((((..(((((.((....)).))))))))).)))))))))))))..
-UGGAGAUGAUGGAACCUCGA--------------------------------------------- l=20 a=0 c
---------------------------------------------------GAUCCAUCGCCCAUA l=15 a=0 c*
-UGGAGAUGAUGGAACCUCGAC-------------------------------------------- l=21 a=1 ma
--------------------------------------------------AGAUCCAUCGCCCAUA l=16 a=0 ma*

-UGGAGAUGAUGGAACCUCGAC-------------------------------------------- l=21 a=1 (ma)
-UGGAGAUGAUGGAACCUCGAa-------------------------------------------- l=21 a=1 
-----------------UCGACUUGAGCAAGGAGAGACCU-------------------------- l=23 a=1 
-----------------------UGAGCAAGGAGAGACCUGU------------------------ l=19 a=1 

mb-01011
ax-1011011
ku-01
ss-100110111000
fn-101
